SNP Profiles of BE 2 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	CC	CT	CC	GG	GT	TT	CC	CC	GG	TT	AA	TT	AA
1._BE_2	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
2._BE_2	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
3._BE_2	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
4._BE_2	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
5._BE_2	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
6._BE_2	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
7._BE_2	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
8._BE_2	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
9._BE_2	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
10._BE_2	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
11._BE_2	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
12._BE_2	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
13._GC-01-047-3-02	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
14._GC-01-047-3-02	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
15._GC-01-047-3-02	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
16._GC-01-047-3-02	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
17._GC-01-047-3-02	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
18._GC-01-047-3-02	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
19._GC-01-047-3-02	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
20._GC-01-047-3-02	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
21._GC-01-047-3-02	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
22._GC-01-047-3-02	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
23._GC-01-047-3-02	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AA	CC	CC	TT	AC	GG	CG	TT	AA	CC	TT	GG	CC
1._BE_2	_	_	_	_	_	CC	_	CG	_	AA	_	_	_	_
2._BE_2	_	_	_	_	_	CC	_	CG	_	AA	_	_	_	_
3._BE_2	_	_	_	_	_	CC	_	CG	_	AA	_	_	_	_
4._BE_2	_	_	_	_	_	CC	_	CG	_	AA	_	_	_	_
5._BE_2	_	_	_	_	_	CC	_	CG	_	AA	_	_	_	_
6._BE_2	_	_	_	_	_	CC	_	CG	_	AA	_	_	_	_
7._BE_2	_	_	_	_	_	CC	_	CG	_	AA	_	_	_	_
8._BE_2	_	_	_	_	_	CC	_	CG	_	AA	_	_	_	_
9._BE_2	_	_	_	_	_	CC	_	CG	_	AA	_	_	_	_
10._BE_2	_	_	_	_	_	CC	_	CG	_	AA	_	_	_	_
11._BE_2	_	_	_	_	_	CC	_	CG	_	AA	_	_	_	_
12._BE_2	_	_	_	_	_	CC	_	CG	_	AA	_	_	_	_
13._GC-01-047-3-02	GG	_	_	_	_	CC	_	CG	_	AA	CC	_	_	_
14._GC-01-047-3-02	GG	_	_	_	_	CC	_	CG	_	AA	CC	_	_	_
15._GC-01-047-3-02	GG	_	_	_	_	CC	_	CG	_	AA	CC	_	_	_
16._GC-01-047-3-02	GG	_	_	_	_	CC	_	CG	_	AA	CC	_	_	_
17._GC-01-047-3-02	GG	_	_	_	_	CC	_	CG	_	AA	CC	_	_	_
18._GC-01-047-3-02	GG	_	_	_	_	CC	_	CG	_	AA	CC	_	_	_
19._GC-01-047-3-02	GG	_	_	_	_	CC	_	CG	_	AA	CC	_	_	_
20._GC-01-047-3-02	GG	_	_	_	_	CC	_	CG	_	AA	CC	_	_	_
21._GC-01-047-3-02	GG	_	_	_	_	CC	_	CG	_	AA	CC	_	_	_
22._GC-01-047-3-02	GG	_	_	_	_	CC	_	CG	_	AA	CC	_	_	_
23._GC-01-047-3-02	GG	_	_	_	_	CC	_	CG	_	AA	CC	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	GG	TT	GG	GG	CT	TT	AA	AA	TT	GG	GG	CC	AG
1._BE_2	AA	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
2._BE_2	AG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
3._BE_2	AG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
4._BE_2	AG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
5._BE_2	AG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
6._BE_2	AG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
7._BE_2	AG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
8._BE_2	AG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
9._BE_2	AG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
10._BE_2	AG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
11._BE_2	AG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
12._BE_2	AG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
13._GC-01-047-3-02	AG	_	TT	GG	GG	_	_	AA	_	GG	GG	GG	_	AG
14._GC-01-047-3-02	AG	_	TT	GG	GG	_	_	AA	_	GG	GG	GG	_	AG
15._GC-01-047-3-02	AG	_	TT	GG	GG	_	_	AA	_	GG	GG	GG	_	AG
16._GC-01-047-3-02	AG	_	TT	GG	GG	_	_	AA	_	GG	GG	GG	_	AG
17._GC-01-047-3-02	AG	_	TT	GG	GG	_	_	AA	_	GG	GG	GG	_	AG
18._GC-01-047-3-02	AG	_	TT	GG	GG	_	_	AA	_	GG	GG	GG	_	AG
19._GC-01-047-3-02	AG	_	TT	GG	GG	_	_	AA	_	GG	GG	GG	_	AG
20._GC-01-047-3-02	AG	_	TT	GG	GG	_	_	AA	_	GG	GG	GG	_	AG
21._GC-01-047-3-02	AG	_	TT	GG	GG	_	_	AA	_	GG	GG	GG	_	AG
22._GC-01-047-3-02	AG	_	TT	GG	GG	_	_	AA	_	GG	GG	GG	_	AG
23._GC-01-047-3-02	AG	_	TT	GG	GG	_	_	AA	_	GG	GG	GG	_	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	CC	AA	CC	AA	TT	CT	TT	AA	TT	TT	GG	AT	AA
1._BE_2	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
2._BE_2	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
3._BE_2	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
4._BE_2	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
5._BE_2	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
6._BE_2	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
7._BE_2	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
8._BE_2	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
9._BE_2	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
10._BE_2	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
11._BE_2	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
12._BE_2	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
13._GC-01-047-3-02	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
14._GC-01-047-3-02	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
15._GC-01-047-3-02	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
16._GC-01-047-3-02	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
17._GC-01-047-3-02	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
18._GC-01-047-3-02	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
19._GC-01-047-3-02	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
20._GC-01-047-3-02	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
21._GC-01-047-3-02	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
22._GC-01-047-3-02	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
23._GC-01-047-3-02	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_

	57	58	59	60
_Input profile	GG	CG	TT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._BE_2	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._BE_2	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._BE_2	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._BE_2	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._BE_2	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._BE_2	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._BE_2	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._BE_2	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._BE_2	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._BE_2	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._BE_2	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._BE_2	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-01-047-3-02	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-01-047-3-02	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-01-047-3-02	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-01-047-3-02	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-01-047-3-02	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-01-047-3-02	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-01-047-3-02	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-01-047-3-02	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._GC-01-047-3-02	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._GC-01-047-3-02	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._GC-01-047-3-02	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: BE_2 RUQ_1733

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._BE_2

96.2 %
13 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

2._BE_2

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 3

Dapeng Zhang, 2016

3._BE_2

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._BE_2

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 4

Dapeng Zhang, 2016

5._BE_2

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 6

Dapeng Zhang, 2016

6._BE_2

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 11

Dapeng Zhang, 2016

7._BE_2

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 13

Dapeng Zhang, 2016

8._BE_2

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 14

Dapeng Zhang, 2016

9._BE_2

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302

Dapeng Zhang, 2016

10._BE_2

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 12 > F

Dapeng Zhang, 2016

11._BE_2

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 16 > F

Dapeng Zhang, 2016

12._BE_2

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1302 8 > FP

Dapeng Zhang, 2016

13._BE_2 GC-01-047-3-02

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16 > FP4

14._BE_2 GC-01-047-3-02

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

15._BE_2 GC-01-047-3-02

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

16._BE_2 GC-01-047-3-02

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

17._BE_2 GC-01-047-3-02

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

18._BE_2 GC-01-047-3-02

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

19._BE_2 GC-01-047-3-02

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

20._BE_2 GC-01-047-3-02

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

21._BE_2 GC-01-047-3-02

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

22._BE_2 GC-01-047-3-02

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

23._BE_2 GC-01-047-3-02

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1237	53	TcSNP1253	54	TcSNP1275	55	TcSNP1293
56	TcSNP1401	57	TcSNP1404	58	TcSNP1458	59	TcSNP1524	60	TcSNP1527